It is important to note that both of them need to be taken in a specific ratio. Omega-6 should be taken about twice as much as Omega-3. So, the recommended ratio is 2: 1.
The modern diets however have a much higher quantity of Omega-6 compared to Omega-3. This change in the ratio of the two fatty acid has been shown to be the cause of increased prevalence of chronic diseases like obesity, diabetes and heart disease.